A complete, executable example

In the example/ folder, you’ll find a complete example of how a reproducible pipeline might look like. To execute the code, just run doit in the example/ directory and doit show to display the finished document.

Specifically, its a finite element simulation using FEniCS, a postprocessing step using Paraview and the final mock paper is created with LaTeX. The details of how this is put together can be found in the subdirectories:

example/

• the main dodo.py file that wires/automates all actions required to display the publication-ready document

example/computation/

• scripts needed to run the simulations, e.g. via docker

• raw result files

example/plots/

• scripts needed for postprocessing that usually take data from computation/

• publication-ready images (pdfs/pngs/…)

example/tex/

• tex code that usually takes the images from plots/