.. Reproducible Computational Science documentation master file, created by sphinx-quickstart on Wed Apr 8 08:57:24 2020. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. Reproducible Computational Science - a Guideline ================================================ More than 70% of researchers have tried and failed to reproduce another scientist's experiments, and more than half have failed to reproduce their own experiments. [\ `1 `_\ ] In the field of modeling and simulation, we can *and should* ensure reproducibility with a fully automated workflow [\ `2 `_\ ] from the input scripts to a finished document. This allows for external verification, greater trust in your results and comparative ease in reconstructing details of your own work in the future. We would like to establish a working group within BAM that develops a wiki/handbook of possible approaches to tackle these challenges. Everyone should be able to access these documents and will be able to use these as a basis for future projects. The competence center modeling and simulation will coordinate the efforts towards this goal, provide guidance and the infrastructure (e.g. a wiki, repositories). For completing the tasks itself, however, we mainly rely on the work of the interested participants. .. toctree:: :maxdepth: 2 :caption: Contents: reproducibility.md example.md CONTRIBUTING.md docker.md pydoit.md snakemake.md conda.md scripts/modify_files.rst From `BAM/jupyter-integration `_: ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ * `JupyterLab with version control `_ * `Using Git and TortoiseGit `_